querynator

Python package to query cancer variant databases

• Free software: MIT license

• Documentation: https://querynator.readthedocs.io.

Features

• Command-line tool to query the cancergenomeinterpreter via its REST API

Credits

This package uses the cancergenomeinterpreter.org REST API for data retrieval.

• Muiños, F., Martínez-Jiménez, F., Pich, O. et al. In silico saturation mutagenesis of cancer genes. Nature 596, 428–432 (2021). https://doi.org/10.1038/s41586-021-03771-1

• Tamborero, D. Rubio-Perez, C., Deu-Pons, J. et al., Cancer Genome Interpreter annotates the biological and clinical relevance of tumor alterations. Genome Medicine 10, (2018). doi: https://doi.org/10.1101/140475

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.